Source code for PyMca5.PyMcaIO.SupaVisioMap
#/*##########################################################################
#
# The PyMca X-Ray Fluorescence Toolkit
#
# Copyright (c) 2004-2014 European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
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__author__ = "V.A. Sole - ESRF Data Analysis"
__contact__ = "sole@esrf.fr"
__license__ = "MIT"
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France"
import sys
import os
import numpy
import struct
import time
from PyMca5 import DataObject
from PyMca5.PyMcaIO import PyMcaIOHelper
DEBUG = 0
SOURCE_TYPE="EdfFileStack"
[docs]class SupaVisioMap(DataObject.DataObject):
def __init__(self, filename):
DataObject.DataObject.__init__(self)
fileSize = os.path.getsize(filename)
if sys.platform == 'win32':
fid = open(filename, 'rb')
else:
fid = open(filename, 'r')
data=fid.read()
fid.close()
self.sourceName = [filename]
e0 = time.time()
values = struct.unpack("%dH" % (len(data)/2), data)
data = numpy.array(values, numpy.uint16)
#print values
nrows = values[1]
ncols = values[2]
self.nSpectra = nrows * ncols
data.shape = [len(data)/3, 3]
self.nChannels = data[:,2].max() + 1
#fill the header
self.header =[]
self.nRows = nrows
#arrange as an EDF Stack
self.info = {}
self.__nFiles = (self.nSpectra)/self.nRows
self.__nImagesPerFile = 1
e0 = time.time()
self.data = PyMcaIOHelper.fillSupaVisio(data).astype(numpy.float);
shape = self.data.shape
for i in range(len(shape)):
key = 'Dim_%d' % (i+1,)
self.info[key] = shape[i]
self.info["SourceType"] = SOURCE_TYPE
self.info["SourceName"] = self.sourceName
self.info["Size"] = self.__nFiles * self.__nImagesPerFile
self.info["NumberOfFiles"] = self.__nFiles * 1
self.info["FileIndex"] = 0
self.info["McaCalib"] = [0.0, 1.0, 0.0]
self.info["Channel0"] = 0.0
if __name__ == "__main__":
filename = None
if len(sys.argv) > 1:
filename = sys.argv[1]
elif os.path.exists(".\PIGE\010826.pige"):
filename = ".\PIGE\010826.pige"
if filename is not None:
DEBUG = 1
w = SupaVisioMap(filename)
else:
print("Please supply input filename")